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When we first meet her, Amagi is a scientist in the Japanese military, who has worked with Dr. Ayanokoji on the military's Steel Angel project. She, along with Dr. Brandow, is able to temporarily awaken Saki and send her after Kurumi. However, after Saki's "forced activation" fails and Dr. Ayanokoji is kidnapped by the Academy, the General dismisses Amagi from military service so she can search for Dr. Ayanokoji without attracting further government attention. From then on, she travels with Kurumi, Saki, and Nakahito as they try to get to Dr. Ayanokoji's secret lab in Izumo. She also acts as their guardian during this period.
Dr. Amagi has a serious, scientific, no-nonsense personality, which often puts her at odds with Kurumi's emotional antics. She cares for her traveling companions like a mother, realizing that they are too young and/or naive to care for themselves. She also apparently has a crush on Dr. Ayanokoji, although it is not apparent whether he has feelings for her as well.
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